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Why does a table with a defined constant in its index compute 10X slower?


Why does array packing in Table behave like this?Why is building a table of function values so much slower than just plotting the function?Issue with very large lists in MathematicaWhy does `Table` returns values but `Plot` doesn't plot them?How to speed up computation of medoids?Why is CompilationTarget -> C slower than directly writing with C?ParallelTable much slower than Table on RandomReal with arbitrary precisionPart does not exist in table construction, but I don't explicitly index that highwhy Findroot slower with jacobian?Why does Table[] slow down exponentially with increasing length?













8












$begingroup$


I need to do some iterative summations. Here is a minimum working example:



data = Table[RandomReal[], x, 1, 1000000];
(* Method 1 *)
Timing[Total[Table[Total[ Table[data[[i]], i, j, 10 + j]], j, 1, Length[data] - 5*10]]]

(* Method 2, with constant index *)
m = 10;
Timing[Total[Table[Total[ Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*m]]]


And here are the outputs:




0.5625, 5.49936*10^6



9.28125, 5.49936*10^6




For some reason, using m=10 makes it much slower. I will need to do a bunch of m's, so this is the bottom of a larger nest.



What is a faster way to do this?



Late Edit:



Bonus question: How to optimize this one as well:



Timing[Total[Table[ (Total[ Table[data[[i]], i, j, m + j]])^2 , j, 1, Length[data] - 5*m]]]









share|improve this question











$endgroup$
















    8












    $begingroup$


    I need to do some iterative summations. Here is a minimum working example:



    data = Table[RandomReal[], x, 1, 1000000];
    (* Method 1 *)
    Timing[Total[Table[Total[ Table[data[[i]], i, j, 10 + j]], j, 1, Length[data] - 5*10]]]

    (* Method 2, with constant index *)
    m = 10;
    Timing[Total[Table[Total[ Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*m]]]


    And here are the outputs:




    0.5625, 5.49936*10^6



    9.28125, 5.49936*10^6




    For some reason, using m=10 makes it much slower. I will need to do a bunch of m's, so this is the bottom of a larger nest.



    What is a faster way to do this?



    Late Edit:



    Bonus question: How to optimize this one as well:



    Timing[Total[Table[ (Total[ Table[data[[i]], i, j, m + j]])^2 , j, 1, Length[data] - 5*m]]]









    share|improve this question











    $endgroup$














      8












      8








      8


      2



      $begingroup$


      I need to do some iterative summations. Here is a minimum working example:



      data = Table[RandomReal[], x, 1, 1000000];
      (* Method 1 *)
      Timing[Total[Table[Total[ Table[data[[i]], i, j, 10 + j]], j, 1, Length[data] - 5*10]]]

      (* Method 2, with constant index *)
      m = 10;
      Timing[Total[Table[Total[ Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*m]]]


      And here are the outputs:




      0.5625, 5.49936*10^6



      9.28125, 5.49936*10^6




      For some reason, using m=10 makes it much slower. I will need to do a bunch of m's, so this is the bottom of a larger nest.



      What is a faster way to do this?



      Late Edit:



      Bonus question: How to optimize this one as well:



      Timing[Total[Table[ (Total[ Table[data[[i]], i, j, m + j]])^2 , j, 1, Length[data] - 5*m]]]









      share|improve this question











      $endgroup$




      I need to do some iterative summations. Here is a minimum working example:



      data = Table[RandomReal[], x, 1, 1000000];
      (* Method 1 *)
      Timing[Total[Table[Total[ Table[data[[i]], i, j, 10 + j]], j, 1, Length[data] - 5*10]]]

      (* Method 2, with constant index *)
      m = 10;
      Timing[Total[Table[Total[ Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*m]]]


      And here are the outputs:




      0.5625, 5.49936*10^6



      9.28125, 5.49936*10^6




      For some reason, using m=10 makes it much slower. I will need to do a bunch of m's, so this is the bottom of a larger nest.



      What is a faster way to do this?



      Late Edit:



      Bonus question: How to optimize this one as well:



      Timing[Total[Table[ (Total[ Table[data[[i]], i, j, m + j]])^2 , j, 1, Length[data] - 5*m]]]






      list-manipulation performance-tuning table






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited May 16 at 19:53









      Carl Woll

      79.9k3102207




      79.9k3102207










      asked May 16 at 17:07









      axsvl77axsvl77

      425316




      425316




















          2 Answers
          2






          active

          oldest

          votes


















          12












          $begingroup$

          The problem lies mostly in the inner Table:



          Timing[Total[Table[Total[Table[data[[i]], i, j, 10 + j]], j, 1,Length[data] - 5*10]]]

          m = 10;
          Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*10]]]



          0.366407, 5.50276*10^6



          8.01738, 5.50276*10^6




          I think the reason is this:
          Because the global variable m could theoretically change its value during the computions, the body of the outer table cannot be compiled (without calls to MainEvaluate). At least, the JIT compiler does not analyze the body of the outer loop thoroughly enough to decide that m won't change.



          You can help the JIT compiler by using With:



          With[m = 10,
          Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1,Length[data] - 5*m]]]
          ]



          0.369601, 5.5049*10^6




          Addendum:



          By focusing on the post's title, I have completely overlooked the question on how to make it faster. Here is my proposal (c) vs. the OP's one (a) and Carl's (b):



          a = With[m = 10,
          Total[
          Table[Total[Table[data[[i]], i, j, m + j]], j, 1,
          Length[data] - 5*m]]
          ]; // RepeatedTiming // First
          b = Total@ListCorrelate[ConstantArray[1., m + 1],
          data[[;; -50 + m - 1]]]; // RepeatedTiming // First
          c = Plus[
          Range[1., m].data[[1 ;; m]],
          (m + 1) Total[data[[m + 1 ;; -5*m - 1]]],
          Range[N@m, 1., -1].data[[-5 m ;; -4 m - 1]]
          ]; // RepeatedTiming // First

          a == b == c



          0.28



          0.017



          0.0018



          True







          share|improve this answer











          $endgroup$




















            9












            $begingroup$

            You can use ListCorrelate:



            m=10;
            Total @ ListCorrelate[ConstantArray[1,m+1], data[[;;-4 m-1]]] //AbsoluteTiming



            0.017725, 5.50044*10^6




            Bonus question



            For the bonus question:



            data = RandomReal[1, 10^5];


            Your version:



            With[m = 10,
            Total[Table[(Total[Table[data[[i]],i,j,m+j]])^2,j,1,Length[data]-5*m]]
            ] //AbsoluteTiming



            0.448739, 3.11778*10^7




            Using ListCorrelate again:



            m = 10;
            #.#& @ ListCorrelate[ConstantArray[1, m+1], data[[ ;; -4 m - 1]]] //AbsoluteTiming



            0.018401, 3.11778*10^7







            share|improve this answer











            $endgroup$












            • $begingroup$
              Carl, nice use of the dot-product to overcome the internal compiling issues that would prevent implementing the mapping of a slotted set! I was attempting a solution with this same thought process, but was unable to overcome the change of #^2 to #1^2 during my attempts at a solution. Your use of ListCorrelate will be helpful in the future, thank you!
              $endgroup$
              – CA Trevillian
              May 17 at 14:21











            Your Answer








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            2 Answers
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            2 Answers
            2






            active

            oldest

            votes









            active

            oldest

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            active

            oldest

            votes









            12












            $begingroup$

            The problem lies mostly in the inner Table:



            Timing[Total[Table[Total[Table[data[[i]], i, j, 10 + j]], j, 1,Length[data] - 5*10]]]

            m = 10;
            Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*10]]]



            0.366407, 5.50276*10^6



            8.01738, 5.50276*10^6




            I think the reason is this:
            Because the global variable m could theoretically change its value during the computions, the body of the outer table cannot be compiled (without calls to MainEvaluate). At least, the JIT compiler does not analyze the body of the outer loop thoroughly enough to decide that m won't change.



            You can help the JIT compiler by using With:



            With[m = 10,
            Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1,Length[data] - 5*m]]]
            ]



            0.369601, 5.5049*10^6




            Addendum:



            By focusing on the post's title, I have completely overlooked the question on how to make it faster. Here is my proposal (c) vs. the OP's one (a) and Carl's (b):



            a = With[m = 10,
            Total[
            Table[Total[Table[data[[i]], i, j, m + j]], j, 1,
            Length[data] - 5*m]]
            ]; // RepeatedTiming // First
            b = Total@ListCorrelate[ConstantArray[1., m + 1],
            data[[;; -50 + m - 1]]]; // RepeatedTiming // First
            c = Plus[
            Range[1., m].data[[1 ;; m]],
            (m + 1) Total[data[[m + 1 ;; -5*m - 1]]],
            Range[N@m, 1., -1].data[[-5 m ;; -4 m - 1]]
            ]; // RepeatedTiming // First

            a == b == c



            0.28



            0.017



            0.0018



            True







            share|improve this answer











            $endgroup$

















              12












              $begingroup$

              The problem lies mostly in the inner Table:



              Timing[Total[Table[Total[Table[data[[i]], i, j, 10 + j]], j, 1,Length[data] - 5*10]]]

              m = 10;
              Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*10]]]



              0.366407, 5.50276*10^6



              8.01738, 5.50276*10^6




              I think the reason is this:
              Because the global variable m could theoretically change its value during the computions, the body of the outer table cannot be compiled (without calls to MainEvaluate). At least, the JIT compiler does not analyze the body of the outer loop thoroughly enough to decide that m won't change.



              You can help the JIT compiler by using With:



              With[m = 10,
              Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1,Length[data] - 5*m]]]
              ]



              0.369601, 5.5049*10^6




              Addendum:



              By focusing on the post's title, I have completely overlooked the question on how to make it faster. Here is my proposal (c) vs. the OP's one (a) and Carl's (b):



              a = With[m = 10,
              Total[
              Table[Total[Table[data[[i]], i, j, m + j]], j, 1,
              Length[data] - 5*m]]
              ]; // RepeatedTiming // First
              b = Total@ListCorrelate[ConstantArray[1., m + 1],
              data[[;; -50 + m - 1]]]; // RepeatedTiming // First
              c = Plus[
              Range[1., m].data[[1 ;; m]],
              (m + 1) Total[data[[m + 1 ;; -5*m - 1]]],
              Range[N@m, 1., -1].data[[-5 m ;; -4 m - 1]]
              ]; // RepeatedTiming // First

              a == b == c



              0.28



              0.017



              0.0018



              True







              share|improve this answer











              $endgroup$















                12












                12








                12





                $begingroup$

                The problem lies mostly in the inner Table:



                Timing[Total[Table[Total[Table[data[[i]], i, j, 10 + j]], j, 1,Length[data] - 5*10]]]

                m = 10;
                Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*10]]]



                0.366407, 5.50276*10^6



                8.01738, 5.50276*10^6




                I think the reason is this:
                Because the global variable m could theoretically change its value during the computions, the body of the outer table cannot be compiled (without calls to MainEvaluate). At least, the JIT compiler does not analyze the body of the outer loop thoroughly enough to decide that m won't change.



                You can help the JIT compiler by using With:



                With[m = 10,
                Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1,Length[data] - 5*m]]]
                ]



                0.369601, 5.5049*10^6




                Addendum:



                By focusing on the post's title, I have completely overlooked the question on how to make it faster. Here is my proposal (c) vs. the OP's one (a) and Carl's (b):



                a = With[m = 10,
                Total[
                Table[Total[Table[data[[i]], i, j, m + j]], j, 1,
                Length[data] - 5*m]]
                ]; // RepeatedTiming // First
                b = Total@ListCorrelate[ConstantArray[1., m + 1],
                data[[;; -50 + m - 1]]]; // RepeatedTiming // First
                c = Plus[
                Range[1., m].data[[1 ;; m]],
                (m + 1) Total[data[[m + 1 ;; -5*m - 1]]],
                Range[N@m, 1., -1].data[[-5 m ;; -4 m - 1]]
                ]; // RepeatedTiming // First

                a == b == c



                0.28



                0.017



                0.0018



                True







                share|improve this answer











                $endgroup$



                The problem lies mostly in the inner Table:



                Timing[Total[Table[Total[Table[data[[i]], i, j, 10 + j]], j, 1,Length[data] - 5*10]]]

                m = 10;
                Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1, Length[data] - 5*10]]]



                0.366407, 5.50276*10^6



                8.01738, 5.50276*10^6




                I think the reason is this:
                Because the global variable m could theoretically change its value during the computions, the body of the outer table cannot be compiled (without calls to MainEvaluate). At least, the JIT compiler does not analyze the body of the outer loop thoroughly enough to decide that m won't change.



                You can help the JIT compiler by using With:



                With[m = 10,
                Timing[Total[Table[Total[Table[data[[i]], i, j, m + j]], j, 1,Length[data] - 5*m]]]
                ]



                0.369601, 5.5049*10^6




                Addendum:



                By focusing on the post's title, I have completely overlooked the question on how to make it faster. Here is my proposal (c) vs. the OP's one (a) and Carl's (b):



                a = With[m = 10,
                Total[
                Table[Total[Table[data[[i]], i, j, m + j]], j, 1,
                Length[data] - 5*m]]
                ]; // RepeatedTiming // First
                b = Total@ListCorrelate[ConstantArray[1., m + 1],
                data[[;; -50 + m - 1]]]; // RepeatedTiming // First
                c = Plus[
                Range[1., m].data[[1 ;; m]],
                (m + 1) Total[data[[m + 1 ;; -5*m - 1]]],
                Range[N@m, 1., -1].data[[-5 m ;; -4 m - 1]]
                ]; // RepeatedTiming // First

                a == b == c



                0.28



                0.017



                0.0018



                True








                share|improve this answer














                share|improve this answer



                share|improve this answer








                edited May 16 at 19:12

























                answered May 16 at 17:15









                Henrik SchumacherHenrik Schumacher

                63k587176




                63k587176





















                    9












                    $begingroup$

                    You can use ListCorrelate:



                    m=10;
                    Total @ ListCorrelate[ConstantArray[1,m+1], data[[;;-4 m-1]]] //AbsoluteTiming



                    0.017725, 5.50044*10^6




                    Bonus question



                    For the bonus question:



                    data = RandomReal[1, 10^5];


                    Your version:



                    With[m = 10,
                    Total[Table[(Total[Table[data[[i]],i,j,m+j]])^2,j,1,Length[data]-5*m]]
                    ] //AbsoluteTiming



                    0.448739, 3.11778*10^7




                    Using ListCorrelate again:



                    m = 10;
                    #.#& @ ListCorrelate[ConstantArray[1, m+1], data[[ ;; -4 m - 1]]] //AbsoluteTiming



                    0.018401, 3.11778*10^7







                    share|improve this answer











                    $endgroup$












                    • $begingroup$
                      Carl, nice use of the dot-product to overcome the internal compiling issues that would prevent implementing the mapping of a slotted set! I was attempting a solution with this same thought process, but was unable to overcome the change of #^2 to #1^2 during my attempts at a solution. Your use of ListCorrelate will be helpful in the future, thank you!
                      $endgroup$
                      – CA Trevillian
                      May 17 at 14:21















                    9












                    $begingroup$

                    You can use ListCorrelate:



                    m=10;
                    Total @ ListCorrelate[ConstantArray[1,m+1], data[[;;-4 m-1]]] //AbsoluteTiming



                    0.017725, 5.50044*10^6




                    Bonus question



                    For the bonus question:



                    data = RandomReal[1, 10^5];


                    Your version:



                    With[m = 10,
                    Total[Table[(Total[Table[data[[i]],i,j,m+j]])^2,j,1,Length[data]-5*m]]
                    ] //AbsoluteTiming



                    0.448739, 3.11778*10^7




                    Using ListCorrelate again:



                    m = 10;
                    #.#& @ ListCorrelate[ConstantArray[1, m+1], data[[ ;; -4 m - 1]]] //AbsoluteTiming



                    0.018401, 3.11778*10^7







                    share|improve this answer











                    $endgroup$












                    • $begingroup$
                      Carl, nice use of the dot-product to overcome the internal compiling issues that would prevent implementing the mapping of a slotted set! I was attempting a solution with this same thought process, but was unable to overcome the change of #^2 to #1^2 during my attempts at a solution. Your use of ListCorrelate will be helpful in the future, thank you!
                      $endgroup$
                      – CA Trevillian
                      May 17 at 14:21













                    9












                    9








                    9





                    $begingroup$

                    You can use ListCorrelate:



                    m=10;
                    Total @ ListCorrelate[ConstantArray[1,m+1], data[[;;-4 m-1]]] //AbsoluteTiming



                    0.017725, 5.50044*10^6




                    Bonus question



                    For the bonus question:



                    data = RandomReal[1, 10^5];


                    Your version:



                    With[m = 10,
                    Total[Table[(Total[Table[data[[i]],i,j,m+j]])^2,j,1,Length[data]-5*m]]
                    ] //AbsoluteTiming



                    0.448739, 3.11778*10^7




                    Using ListCorrelate again:



                    m = 10;
                    #.#& @ ListCorrelate[ConstantArray[1, m+1], data[[ ;; -4 m - 1]]] //AbsoluteTiming



                    0.018401, 3.11778*10^7







                    share|improve this answer











                    $endgroup$



                    You can use ListCorrelate:



                    m=10;
                    Total @ ListCorrelate[ConstantArray[1,m+1], data[[;;-4 m-1]]] //AbsoluteTiming



                    0.017725, 5.50044*10^6




                    Bonus question



                    For the bonus question:



                    data = RandomReal[1, 10^5];


                    Your version:



                    With[m = 10,
                    Total[Table[(Total[Table[data[[i]],i,j,m+j]])^2,j,1,Length[data]-5*m]]
                    ] //AbsoluteTiming



                    0.448739, 3.11778*10^7




                    Using ListCorrelate again:



                    m = 10;
                    #.#& @ ListCorrelate[ConstantArray[1, m+1], data[[ ;; -4 m - 1]]] //AbsoluteTiming



                    0.018401, 3.11778*10^7








                    share|improve this answer














                    share|improve this answer



                    share|improve this answer








                    edited May 16 at 20:04

























                    answered May 16 at 17:21









                    Carl WollCarl Woll

                    79.9k3102207




                    79.9k3102207











                    • $begingroup$
                      Carl, nice use of the dot-product to overcome the internal compiling issues that would prevent implementing the mapping of a slotted set! I was attempting a solution with this same thought process, but was unable to overcome the change of #^2 to #1^2 during my attempts at a solution. Your use of ListCorrelate will be helpful in the future, thank you!
                      $endgroup$
                      – CA Trevillian
                      May 17 at 14:21
















                    • $begingroup$
                      Carl, nice use of the dot-product to overcome the internal compiling issues that would prevent implementing the mapping of a slotted set! I was attempting a solution with this same thought process, but was unable to overcome the change of #^2 to #1^2 during my attempts at a solution. Your use of ListCorrelate will be helpful in the future, thank you!
                      $endgroup$
                      – CA Trevillian
                      May 17 at 14:21















                    $begingroup$
                    Carl, nice use of the dot-product to overcome the internal compiling issues that would prevent implementing the mapping of a slotted set! I was attempting a solution with this same thought process, but was unable to overcome the change of #^2 to #1^2 during my attempts at a solution. Your use of ListCorrelate will be helpful in the future, thank you!
                    $endgroup$
                    – CA Trevillian
                    May 17 at 14:21




                    $begingroup$
                    Carl, nice use of the dot-product to overcome the internal compiling issues that would prevent implementing the mapping of a slotted set! I was attempting a solution with this same thought process, but was unable to overcome the change of #^2 to #1^2 during my attempts at a solution. Your use of ListCorrelate will be helpful in the future, thank you!
                    $endgroup$
                    – CA Trevillian
                    May 17 at 14:21

















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