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“Accept” header in HTTP request for DOI Content Negotiation


Header and footer banners in Slide Show styleUsing GatherBy with a DataSet's header designation instead of FirstHow to place a Tagging Rule in the Page HeaderHTTP Status Code 403Why POST be replaced by GET in HTTP request?APIFunction can not access HTTP request body when used with URLDispatcherWho is to blame: parsing UTF8 encoded JSON HTTPResponse failsURLRead ignores content-encoding:gzip headerAPI HTTP Request Signing using base64 encoding/decoding and HMAC (Cryptocurrencies Exchange, GDAX)How to get URL request response in Mathematica?






.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty margin-bottom:0;








3












$begingroup$


I am trying to get the .bib info from a DOI, following the guide here.



Basically, I wish to run



curl -LH "Accept: application/x-bibtex" http://dx.doi.org/10.1016/j.algal.2015.04.001


to define an "Accept" header with content "application/x-bibtex".



With Mathematica. I try



 URLRead[HTTPRequest[URL["https://doi.org/10.1007/s00209-015-1612-7"],
<| "Method" -> "GET",
"Headers" -> "Accept: application/x-bibtex",
"ContentType" -> "application/x-bibtex"|>]]


but this fails, with error message




"Message text not found -- (Accept: application/x-bibtex"




The output I expect is a string, with the contents:



@article{Kouhia_2015,
doi = 10.1016/j.algal.2015.04.001,
url = http://dx.doi.org/10.1016/j.algal.2015.04.001,
year = 2015,
month = jul,
publisher = Elsevier BV,
volume = 10,
pages = 41--47,
author = Mikko Kouhia and Henrik Holmberg and Pekka Ahtila,
title = Microalgae-utilizing biorefinery concept for pulp and paper industry: Converting secondary streams into value-added products,
journal = Algal Research


EDIT: I also want this to work with other journals. curl can handle that as well, as there seem to be a standard to request this particular format.



curl -LH "Accept: application/x-bibtex" https://doi.org/10.1090/s0002-9947-96-01558-9









share|improve this question











$endgroup$


















    3












    $begingroup$


    I am trying to get the .bib info from a DOI, following the guide here.



    Basically, I wish to run



    curl -LH "Accept: application/x-bibtex" http://dx.doi.org/10.1016/j.algal.2015.04.001


    to define an "Accept" header with content "application/x-bibtex".



    With Mathematica. I try



     URLRead[HTTPRequest[URL["https://doi.org/10.1007/s00209-015-1612-7"],
    <| "Method" -> "GET",
    "Headers" -> "Accept: application/x-bibtex",
    "ContentType" -> "application/x-bibtex"|>]]


    but this fails, with error message




    "Message text not found -- (Accept: application/x-bibtex"




    The output I expect is a string, with the contents:



    @article{Kouhia_2015,
    doi = 10.1016/j.algal.2015.04.001,
    url = http://dx.doi.org/10.1016/j.algal.2015.04.001,
    year = 2015,
    month = jul,
    publisher = Elsevier BV,
    volume = 10,
    pages = 41--47,
    author = Mikko Kouhia and Henrik Holmberg and Pekka Ahtila,
    title = Microalgae-utilizing biorefinery concept for pulp and paper industry: Converting secondary streams into value-added products,
    journal = Algal Research


    EDIT: I also want this to work with other journals. curl can handle that as well, as there seem to be a standard to request this particular format.



    curl -LH "Accept: application/x-bibtex" https://doi.org/10.1090/s0002-9947-96-01558-9









    share|improve this question











    $endgroup$














      3












      3








      3


      0



      $begingroup$


      I am trying to get the .bib info from a DOI, following the guide here.



      Basically, I wish to run



      curl -LH "Accept: application/x-bibtex" http://dx.doi.org/10.1016/j.algal.2015.04.001


      to define an "Accept" header with content "application/x-bibtex".



      With Mathematica. I try



       URLRead[HTTPRequest[URL["https://doi.org/10.1007/s00209-015-1612-7"],
      <| "Method" -> "GET",
      "Headers" -> "Accept: application/x-bibtex",
      "ContentType" -> "application/x-bibtex"|>]]


      but this fails, with error message




      "Message text not found -- (Accept: application/x-bibtex"




      The output I expect is a string, with the contents:



      @article{Kouhia_2015,
      doi = 10.1016/j.algal.2015.04.001,
      url = http://dx.doi.org/10.1016/j.algal.2015.04.001,
      year = 2015,
      month = jul,
      publisher = Elsevier BV,
      volume = 10,
      pages = 41--47,
      author = Mikko Kouhia and Henrik Holmberg and Pekka Ahtila,
      title = Microalgae-utilizing biorefinery concept for pulp and paper industry: Converting secondary streams into value-added products,
      journal = Algal Research


      EDIT: I also want this to work with other journals. curl can handle that as well, as there seem to be a standard to request this particular format.



      curl -LH "Accept: application/x-bibtex" https://doi.org/10.1090/s0002-9947-96-01558-9









      share|improve this question











      $endgroup$




      I am trying to get the .bib info from a DOI, following the guide here.



      Basically, I wish to run



      curl -LH "Accept: application/x-bibtex" http://dx.doi.org/10.1016/j.algal.2015.04.001


      to define an "Accept" header with content "application/x-bibtex".



      With Mathematica. I try



       URLRead[HTTPRequest[URL["https://doi.org/10.1007/s00209-015-1612-7"],
      <| "Method" -> "GET",
      "Headers" -> "Accept: application/x-bibtex",
      "ContentType" -> "application/x-bibtex"|>]]


      but this fails, with error message




      "Message text not found -- (Accept: application/x-bibtex"




      The output I expect is a string, with the contents:



      @article{Kouhia_2015,
      doi = 10.1016/j.algal.2015.04.001,
      url = http://dx.doi.org/10.1016/j.algal.2015.04.001,
      year = 2015,
      month = jul,
      publisher = Elsevier BV,
      volume = 10,
      pages = 41--47,
      author = Mikko Kouhia and Henrik Holmberg and Pekka Ahtila,
      title = Microalgae-utilizing biorefinery concept for pulp and paper industry: Converting secondary streams into value-added products,
      journal = Algal Research


      EDIT: I also want this to work with other journals. curl can handle that as well, as there seem to be a standard to request this particular format.



      curl -LH "Accept: application/x-bibtex" https://doi.org/10.1090/s0002-9947-96-01558-9






      web-access headers http-functions






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Jul 4 at 14:06









      rhermans

      22.8k4 gold badges42 silver badges107 bronze badges




      22.8k4 gold badges42 silver badges107 bronze badges










      asked Jul 4 at 11:42









      Per AlexanderssonPer Alexandersson

      1,40410 silver badges17 bronze badges




      1,40410 silver badges17 bronze badges




















          2 Answers
          2






          active

          oldest

          votes


















          4












          $begingroup$

          It seems you are trying to profit from DOI Content Negotiation described here.




          Content negotiation allows a user to request a particular
          representation of a web resource. DOI resolvers use content
          negotiation to provide different representations of metadata
          associated with DOIs.



          A content negotiated request to a DOI resolver is much like a standard
          HTTP request, except server-driven negotiation will take place based
          on the list of acceptable content types a client provides.



          Making a content negotiated request requires the use of a HTTP header, "Accept".




          After @Kuba's comment this works



          With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
          URLRead[
          HTTPRequest[
          url
          , <|
          "Method" -> "GET",
          "Headers" -> "Accept" -> "application/x-bibtex"
          |>
          ]
          , "Body"
          ]
          ]


          Mathematica graphics



          Other content formats defined by crosscite.org are:




          "RDF XML" -> "application/rdf+xml",
          "RDF Turtle" -> "text/turtle",
          "Citeproc JSON " -> "application/vnd.citationstyles.csl+json",
          "Schema.org in JSON-LD " -> "application/vnd.schemaorg.ld+json",
          "Formatted text citation " -> "text/x-bibliography",
          "RIS " -> "application/x-research-info-systems",
          "BibTeX " -> "application/x-bibtex",
          "CrossRef Unixref XML " -> "application/vnd.crossref.unixref+xml",
          "DataCite XML " -> "application/vnd.datacite.datacite+xml",
          "ONIX for DOI " -> "application/vnd.medra.onixdoi+xml"







          I wasn't aware of that capability, so my first approach (A bit convoluted) was to parse the HTML of the journal website.

          With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
          Import[
          Echo@StringJoin[
          "https:",
          First@Select[
          ImportString[
          URLRead[HTTPRequest[url], "Body"]
          , "HTML", "Hyperlinks"
          ], StringContainsQ[#, "format=bibtex"] &, 1]]
          , "String"
          ]
          ]


          This obviously will only work when the DOI link redirects to a journal website with a particular link structure. Notice that the BibTeX content is different.



          Mathematica graphics






          share|improve this answer











          $endgroup$




















            2












            $begingroup$

            request = 
            HTTPRequest[
            URL["https://doi.org/10.1007/s00209-015-1612-7"], <|
            "Method" -> "GET",
            "Headers" -> "Accept" -> "application/x-bibtex",
            "ContentType" -> "application/x-bibtex"|>];

            URLRead[request, "Body"]

            (*
            @articleBlasiak_2016,
            doi = 10.1007/s00209-015-1612-7,
            url = https://doi.org/10.1007%2Fs00209-015-1612-7,
            year = 2016,
            month = jan,
            publisher = Springer Science and Business Media LLC,
            volume = 283,
            number = 1-2,
            pages = 601--628,
            author = Jonah Blasiak,
            title = Haglund's conjecture on 3-column Macdonald polynomials,
            journal = Mathematische Zeitschrift

            *)

            request =
            HTTPRequest[
            URL["https://doi.org/10.1090/s0002-9947-96-01558-9"], <|
            "Method" -> "GET",
            "Headers" -> "Accept" -> "application/x-bibtex",
            "ContentType" -> "application/x-bibtex"|>];

            URLRead[request, "Body"]
            (*
            @articleFomin_1996,
            doi = 10.1090/s0002-9947-96-01558-9,
            url = https://doi.org/10.1090%2Fs0002-9947-96-01558-9,
            year = 1996,
            month = sep,
            publisher = American Mathematical Society (AMS),
            volume = 348,
            number = 09,
            pages = 3591--3621,
            author = Sergey Fomin and Anatol N. Kirillov,
            journal = Transactions of the American Mathematical Society

            * )





            share|improve this answer









            $endgroup$















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              2 Answers
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              active

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              2 Answers
              2






              active

              oldest

              votes









              active

              oldest

              votes






              active

              oldest

              votes









              4












              $begingroup$

              It seems you are trying to profit from DOI Content Negotiation described here.




              Content negotiation allows a user to request a particular
              representation of a web resource. DOI resolvers use content
              negotiation to provide different representations of metadata
              associated with DOIs.



              A content negotiated request to a DOI resolver is much like a standard
              HTTP request, except server-driven negotiation will take place based
              on the list of acceptable content types a client provides.



              Making a content negotiated request requires the use of a HTTP header, "Accept".




              After @Kuba's comment this works



              With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
              URLRead[
              HTTPRequest[
              url
              , <|
              "Method" -> "GET",
              "Headers" -> "Accept" -> "application/x-bibtex"
              |>
              ]
              , "Body"
              ]
              ]


              Mathematica graphics



              Other content formats defined by crosscite.org are:




              "RDF XML" -> "application/rdf+xml",
              "RDF Turtle" -> "text/turtle",
              "Citeproc JSON " -> "application/vnd.citationstyles.csl+json",
              "Schema.org in JSON-LD " -> "application/vnd.schemaorg.ld+json",
              "Formatted text citation " -> "text/x-bibliography",
              "RIS " -> "application/x-research-info-systems",
              "BibTeX " -> "application/x-bibtex",
              "CrossRef Unixref XML " -> "application/vnd.crossref.unixref+xml",
              "DataCite XML " -> "application/vnd.datacite.datacite+xml",
              "ONIX for DOI " -> "application/vnd.medra.onixdoi+xml"







              I wasn't aware of that capability, so my first approach (A bit convoluted) was to parse the HTML of the journal website.

              With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
              Import[
              Echo@StringJoin[
              "https:",
              First@Select[
              ImportString[
              URLRead[HTTPRequest[url], "Body"]
              , "HTML", "Hyperlinks"
              ], StringContainsQ[#, "format=bibtex"] &, 1]]
              , "String"
              ]
              ]


              This obviously will only work when the DOI link redirects to a journal website with a particular link structure. Notice that the BibTeX content is different.



              Mathematica graphics






              share|improve this answer











              $endgroup$

















                4












                $begingroup$

                It seems you are trying to profit from DOI Content Negotiation described here.




                Content negotiation allows a user to request a particular
                representation of a web resource. DOI resolvers use content
                negotiation to provide different representations of metadata
                associated with DOIs.



                A content negotiated request to a DOI resolver is much like a standard
                HTTP request, except server-driven negotiation will take place based
                on the list of acceptable content types a client provides.



                Making a content negotiated request requires the use of a HTTP header, "Accept".




                After @Kuba's comment this works



                With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
                URLRead[
                HTTPRequest[
                url
                , <|
                "Method" -> "GET",
                "Headers" -> "Accept" -> "application/x-bibtex"
                |>
                ]
                , "Body"
                ]
                ]


                Mathematica graphics



                Other content formats defined by crosscite.org are:




                "RDF XML" -> "application/rdf+xml",
                "RDF Turtle" -> "text/turtle",
                "Citeproc JSON " -> "application/vnd.citationstyles.csl+json",
                "Schema.org in JSON-LD " -> "application/vnd.schemaorg.ld+json",
                "Formatted text citation " -> "text/x-bibliography",
                "RIS " -> "application/x-research-info-systems",
                "BibTeX " -> "application/x-bibtex",
                "CrossRef Unixref XML " -> "application/vnd.crossref.unixref+xml",
                "DataCite XML " -> "application/vnd.datacite.datacite+xml",
                "ONIX for DOI " -> "application/vnd.medra.onixdoi+xml"







                I wasn't aware of that capability, so my first approach (A bit convoluted) was to parse the HTML of the journal website.

                With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
                Import[
                Echo@StringJoin[
                "https:",
                First@Select[
                ImportString[
                URLRead[HTTPRequest[url], "Body"]
                , "HTML", "Hyperlinks"
                ], StringContainsQ[#, "format=bibtex"] &, 1]]
                , "String"
                ]
                ]


                This obviously will only work when the DOI link redirects to a journal website with a particular link structure. Notice that the BibTeX content is different.



                Mathematica graphics






                share|improve this answer











                $endgroup$















                  4












                  4








                  4





                  $begingroup$

                  It seems you are trying to profit from DOI Content Negotiation described here.




                  Content negotiation allows a user to request a particular
                  representation of a web resource. DOI resolvers use content
                  negotiation to provide different representations of metadata
                  associated with DOIs.



                  A content negotiated request to a DOI resolver is much like a standard
                  HTTP request, except server-driven negotiation will take place based
                  on the list of acceptable content types a client provides.



                  Making a content negotiated request requires the use of a HTTP header, "Accept".




                  After @Kuba's comment this works



                  With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
                  URLRead[
                  HTTPRequest[
                  url
                  , <|
                  "Method" -> "GET",
                  "Headers" -> "Accept" -> "application/x-bibtex"
                  |>
                  ]
                  , "Body"
                  ]
                  ]


                  Mathematica graphics



                  Other content formats defined by crosscite.org are:




                  "RDF XML" -> "application/rdf+xml",
                  "RDF Turtle" -> "text/turtle",
                  "Citeproc JSON " -> "application/vnd.citationstyles.csl+json",
                  "Schema.org in JSON-LD " -> "application/vnd.schemaorg.ld+json",
                  "Formatted text citation " -> "text/x-bibliography",
                  "RIS " -> "application/x-research-info-systems",
                  "BibTeX " -> "application/x-bibtex",
                  "CrossRef Unixref XML " -> "application/vnd.crossref.unixref+xml",
                  "DataCite XML " -> "application/vnd.datacite.datacite+xml",
                  "ONIX for DOI " -> "application/vnd.medra.onixdoi+xml"







                  I wasn't aware of that capability, so my first approach (A bit convoluted) was to parse the HTML of the journal website.

                  With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
                  Import[
                  Echo@StringJoin[
                  "https:",
                  First@Select[
                  ImportString[
                  URLRead[HTTPRequest[url], "Body"]
                  , "HTML", "Hyperlinks"
                  ], StringContainsQ[#, "format=bibtex"] &, 1]]
                  , "String"
                  ]
                  ]


                  This obviously will only work when the DOI link redirects to a journal website with a particular link structure. Notice that the BibTeX content is different.



                  Mathematica graphics






                  share|improve this answer











                  $endgroup$



                  It seems you are trying to profit from DOI Content Negotiation described here.




                  Content negotiation allows a user to request a particular
                  representation of a web resource. DOI resolvers use content
                  negotiation to provide different representations of metadata
                  associated with DOIs.



                  A content negotiated request to a DOI resolver is much like a standard
                  HTTP request, except server-driven negotiation will take place based
                  on the list of acceptable content types a client provides.



                  Making a content negotiated request requires the use of a HTTP header, "Accept".




                  After @Kuba's comment this works



                  With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
                  URLRead[
                  HTTPRequest[
                  url
                  , <|
                  "Method" -> "GET",
                  "Headers" -> "Accept" -> "application/x-bibtex"
                  |>
                  ]
                  , "Body"
                  ]
                  ]


                  Mathematica graphics



                  Other content formats defined by crosscite.org are:




                  "RDF XML" -> "application/rdf+xml",
                  "RDF Turtle" -> "text/turtle",
                  "Citeproc JSON " -> "application/vnd.citationstyles.csl+json",
                  "Schema.org in JSON-LD " -> "application/vnd.schemaorg.ld+json",
                  "Formatted text citation " -> "text/x-bibliography",
                  "RIS " -> "application/x-research-info-systems",
                  "BibTeX " -> "application/x-bibtex",
                  "CrossRef Unixref XML " -> "application/vnd.crossref.unixref+xml",
                  "DataCite XML " -> "application/vnd.datacite.datacite+xml",
                  "ONIX for DOI " -> "application/vnd.medra.onixdoi+xml"







                  I wasn't aware of that capability, so my first approach (A bit convoluted) was to parse the HTML of the journal website.

                  With[url = URL["https://doi.org/10.1007/s00209-015-1612-7"],
                  Import[
                  Echo@StringJoin[
                  "https:",
                  First@Select[
                  ImportString[
                  URLRead[HTTPRequest[url], "Body"]
                  , "HTML", "Hyperlinks"
                  ], StringContainsQ[#, "format=bibtex"] &, 1]]
                  , "String"
                  ]
                  ]


                  This obviously will only work when the DOI link redirects to a journal website with a particular link structure. Notice that the BibTeX content is different.



                  Mathematica graphics







                  share|improve this answer














                  share|improve this answer



                  share|improve this answer








                  edited Jul 4 at 15:34

























                  answered Jul 4 at 12:47









                  rhermansrhermans

                  22.8k4 gold badges42 silver badges107 bronze badges




                  22.8k4 gold badges42 silver badges107 bronze badges























                      2












                      $begingroup$

                      request = 
                      HTTPRequest[
                      URL["https://doi.org/10.1007/s00209-015-1612-7"], <|
                      "Method" -> "GET",
                      "Headers" -> "Accept" -> "application/x-bibtex",
                      "ContentType" -> "application/x-bibtex"|>];

                      URLRead[request, "Body"]

                      (*
                      @articleBlasiak_2016,
                      doi = 10.1007/s00209-015-1612-7,
                      url = https://doi.org/10.1007%2Fs00209-015-1612-7,
                      year = 2016,
                      month = jan,
                      publisher = Springer Science and Business Media LLC,
                      volume = 283,
                      number = 1-2,
                      pages = 601--628,
                      author = Jonah Blasiak,
                      title = Haglund's conjecture on 3-column Macdonald polynomials,
                      journal = Mathematische Zeitschrift

                      *)

                      request =
                      HTTPRequest[
                      URL["https://doi.org/10.1090/s0002-9947-96-01558-9"], <|
                      "Method" -> "GET",
                      "Headers" -> "Accept" -> "application/x-bibtex",
                      "ContentType" -> "application/x-bibtex"|>];

                      URLRead[request, "Body"]
                      (*
                      @articleFomin_1996,
                      doi = 10.1090/s0002-9947-96-01558-9,
                      url = https://doi.org/10.1090%2Fs0002-9947-96-01558-9,
                      year = 1996,
                      month = sep,
                      publisher = American Mathematical Society (AMS),
                      volume = 348,
                      number = 09,
                      pages = 3591--3621,
                      author = Sergey Fomin and Anatol N. Kirillov,
                      journal = Transactions of the American Mathematical Society

                      * )





                      share|improve this answer









                      $endgroup$

















                        2












                        $begingroup$

                        request = 
                        HTTPRequest[
                        URL["https://doi.org/10.1007/s00209-015-1612-7"], <|
                        "Method" -> "GET",
                        "Headers" -> "Accept" -> "application/x-bibtex",
                        "ContentType" -> "application/x-bibtex"|>];

                        URLRead[request, "Body"]

                        (*
                        @articleBlasiak_2016,
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                        month = jan,
                        publisher = Springer Science and Business Media LLC,
                        volume = 283,
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                        pages = 601--628,
                        author = Jonah Blasiak,
                        title = Haglund's conjecture on 3-column Macdonald polynomials,
                        journal = Mathematische Zeitschrift

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                        number = 09,
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                        share|improve this answer









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                          number = 09,
                          pages = 3591--3621,
                          author = Sergey Fomin and Anatol N. Kirillov,
                          journal = Transactions of the American Mathematical Society

                          * )





                          share|improve this answer









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                          number = 1-2,
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                          title = Haglund's conjecture on 3-column Macdonald polynomials,
                          journal = Mathematische Zeitschrift

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                          number = 09,
                          pages = 3591--3621,
                          author = Sergey Fomin and Anatol N. Kirillov,
                          journal = Transactions of the American Mathematical Society

                          * )






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                          share|improve this answer










                          answered Jul 4 at 13:29









                          Rohit NamjoshiRohit Namjoshi

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